PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000310271
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 347aa    MW: 38359.1 Da    PI: 10.3197
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000310271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.7e-20231265135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  MDP0000310271 231 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 265
                    ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89225261IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-19225277IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-13228266No hitNo description
Gene3DG3DSA:3.30.50.109.4E-17229265IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.07E-13230262No hitNo description
PfamPF003209.1E-18231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MATPWAVRAE LPKGLICALT APFCKMGLPP LATATSCKWK DMEGVEEAAS IDPWSLRRRV  60
GIGCSRRRRS RRRLRTPGKS IRLFASPTMK RFVFALFDCV LLAYNVANVE RFVFMRGKLN  120
DGLLFAKMPM NSGDLGRRGN DGCADVQREK GGGRGTPSTR LTDNDVVSDD RHSXNGERRS  180
GNCVSNFCWD LLQPNKSSPS SHHKNSNRGG NINGVTNGGS GNNDPLLARR CANCDTTSTP  240
LWRNGPRGPK SLCNACGIRF KKEERRATAA AASGGGSSVI GMESNGYQHH NSWIPHSQTQ  300
KMPCFGNEFR FMEDDTAHHE NDINGIPFLS WRLNVTDRPS LVHDFTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15773RRVGIGCSRRRRSRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354660.11e-139PREDICTED: GATA transcription factor 19-like
SwissprotQ8LC792e-51GAT18_ARATH; GATA transcription factor 18
TrEMBLM5VSX03e-95M5VSX0_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s12440.12e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.17e-48GATA family protein